PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478474.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 221aa    MW: 25122 Da    PI: 8.4649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-0584106123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k Fs++  L  H++ H
  XP_016478474.1  84 FECHYCLKDFSNSQALGGHQNAH 106
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-681111No hitNo description
Gene3DG3DSA:3.30.160.603.6E-581110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36584111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEKDISTFFH PSCNIGGNES FSKSGMKIKR LKIFGFELDP CQKYMKGELG DRESVNSSCS  60
TISAGREKQP SNDAKDDDPT EKKFECHYCL KDFSNSQALG GHQNAHKKER MRKKRLQLQE  120
TKARLSYYLQ AFQSSNNNIT NYHGLTSSPY FSDPNLRYDS SNLFTLFEES NISFSSYDQD  180
SQESCTFTLT HGKRSKEKLS SLPNLASKQR CKPLDLELGL G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478474.11e-163PREDICTED: zinc finger protein 5-like
TrEMBLA0A068TY155e-50A0A068TY15_COFCA; Uncharacterized protein
STRINGVIT_01s0026g00850.t014e-48(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-15C2H2 family protein